UCSC Genome Browser MCP Server

Example Use Cases

• 1

  Query gene locations, sequences, and annotations for genomic research.

• 2

  Retrieve SNP and variant data for variant analysis.

• 3

  Access genomic data from multiple species for comparative genomics.

Description

This MCP server exposes 12 tools covering all major UCSC Genome Browser API endpoints, enabling LLM applications to search genomes, list tracks, retrieve DNA sequences, and access annotations. It supports working with large datasets and track hubs, facilitating genomic research, variant analysis, and comparative genomics. The server communicates over stdio following the MCP protocol and includes detailed usage examples and error handling.