PubMed MCP Server

MCPOpen Source20.3

by codingaslu • Healthcare & Bioinformatics

An MCP server that performs asynchronous PubMed searches and returns article abstracts using BioPython's Entrez module.

Example Use Cases

1
Search PubMed programmatically and retrieve article abstracts for downstream processing or analysis.
2
Gather literature abstracts to feed into summarization, evidence extraction, or citation recommendation pipelines.
3
Asynchronous, non-blocking access to biomedical literature during multitasked workflows or conversational exchanges.

Description

This MCP server lets clients query PubMed for articles and retrieve abstracts, running searches asynchronously to avoid blocking. It uses BioPython (Entrez) for PubMed access and integrates with the FastMCP framework to expose a tool (search_pubmed) for MCP clients. The README includes setup and configuration instructions, prerequisites, and example usage for fetching abstracts programmatically.

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Security

Scanned 2 month(s) ago

Risk Level

MINIMAL

Read-only data retrieval, no side effects

Trust Score

D43/100

6/17 checks passed

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Quick Stats

Service TypeMCP

Pricing ModelFree

Capabilities0 Tools / 0 Prompts / 0 Resources

Ownercodingaslu

CategoryHealthcare & Bioinformatics

DependenciesStandalone