OpenGenes MCP Server

MCPOfficialOpen SourceMIT36.5

by longevity-genie • Data & Databases

A Model Context Protocol (MCP) server that exposes the OpenGenes aging and longevity database as a read-only SQL interface for AI assistants and agents.

Example Use Cases

1
Run read-only SQL queries against OpenGenes experimental lifespan data (e.g., find genes that increase lifespan in mice).
2
Fetch detailed schema and enumeration information to build validated SQL queries against the OpenGenes database.
3
Example SQL queries and prompt/documentation resources to translate natural-language research questions into safe SQL requests.

Description

This MCP server provides structured, read-only access to the OpenGenes database (lifespan experiments, gene criteria, hallmarks, and longevity associations). It automatically downloads and caches the latest data and documentation from the Hugging Face Hub, and exposes tools for executing safe SQL queries, retrieving schema information, and getting example queries. Designed to integrate with MCP clients (uvx, Claude Desktop, Cursor, Windsurf, etc.), it enables agents to translate natural language research questions into validated SQL queries against authoritative aging research data.

Capabilities(5 total)

Tools (3)

opengenes_get_schema_info

Get information about the database schema

opengenes_example_queries

Get a list of example SQL queries

opengenes_db_query

Query the Opengenes database that contains data about genes involved in longevity, lifespan extension experiments on model organisms, and changes in human and other organisms with aging. Before caling this tool the first time, always check tools that provide schema information and example queries.

sql:string*

Resources (2)

get_db_prompt

Get the database prompt that describes the OpenGenes database schema and usage guidelines. This resource contains detailed information about: - Database tables and their schemas - Column enumerations and valid values - Usage guidelines for querying the database - Examples of common queries Returns: The complete database prompt text

URI: resource://opengenes_db-promptMIME: text/plain

get_schema_summary

Get a summary of the OpenGenes database schema. Returns: A formatted summary of tables and their purposes

URI: resource://opengenes_schema-summaryMIME: text/plain

Quick Actions

View on GitHub

Security

Scanned 3 month(s) ago

Risk Level

MINIMAL

Read-only data retrieval, no side effects

Trust Score

C62/100

10/17 checks passed

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Quick Stats

Service TypeMCP

Pricing ModelFree

Capabilities3 Tools / 0 Prompts / 2 Resources

Ownerlongevity-genie

CategoryData & Databases

DependenciesStandalone

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