BioContextAI Knowledgebase MCP

MCPOfficialOpen SourceApache-2.041.3

by biocontext-ai • Uncategorized

An MCP server providing standardized access to multiple biomedical resources for AI systems.

Example Use Cases

1
Retrieve verified biomedical data from multiple knowledge bases via a unified protocol.
2
Perform domain-specific biomedical tasks using integrated external APIs.
3
That require local hosting of biomedical data access to avoid rate limits and ensure availability.

Description

BioContextAI Knowledgebase MCP is a Model Context Protocol server that enables large language models and other AI systems to retrieve verified biomedical information and perform domain-specific tasks through a unified access layer. It integrates numerous biomedical APIs and databases, facilitating interoperability without custom integration for each resource. The server can be hosted locally or accessed remotely for testing, supporting agentic biomedical research and tool discovery.

Capabilities(52 total)

Tools (52)

bc_get_uniprot_id_by_protein_symbol

Retrieve UniProt accession ID from protein name and species. Returns the primary accession or None if not found. Returns: str or None: UniProt accession ID string (e.g., 'P04637') or None if not found.

protein_symbol:string*species:string

bc_get_uniprot_protein_info

Retrieve protein information from UniProt database. Provide at least one of protein_id, protein_name, or gene_symbol. Returns: dict: Protein information with accession, proteinDescription, genes, organism, sequence, functions, keywords, references or error message.

protein_id:anyprotein_name:anygene_symbol:anyspecies:anyinclude_references:boolean

bc_get_alphafold_info_by_protein_symbol

Query AlphaFold database using protein name. First converts protein symbol to UniProt ID, then fetches structure predictions. Returns: dict: AlphaFold prediction data including PDB/CIF file URLs, confidence scores, and metadata or error message.

protein_symbol:string*species:string

bc_get_antibody_information

Get detailed antibody information by ID. Retrieves catalog number, vendor, clonality, epitope, applications, and more. Returns: dict: Antibody details including abId, catalog numbers, vendor, clonality, epitope, applications, target species, isotype, citations or error message.

ab_id:string*

bc_get_antibody_list

Search Antibody Registry for antibodies. Returns catalog numbers, vendors, clonality, applications, and metadata. Returns: dict: Search results containing list of antibodies with catalog numbers, vendors, clonality, applications, metadata or error message.

search:string*page:anysize:any

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Security

Scanned 1 month(s) ago

Risk Level

MINIMAL

Read-only data retrieval, no side effects

Trust Score

C57/100

9/17 checks passed

Scores are informational only and provided “as is” without warranty. AgentHotspot assumes no liability for actions taken based on these ratings.

Quick Stats

Service TypeMCP

Pricing ModelFree

Capabilities52 Tools / 0 Prompts / 0 Resources

Ownerbiocontext-ai

CategoryUncategorized

DependenciesStandalone

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