ChEMBL MCP Server

MCPOpen SourceMIT8.7

by BioContext • Healthcare & Bioinformatics

An MCP server that provides programmatic access to ChEMBL data for searching molecules, targets, assays, and bioactivity information.

Example Use Cases

1
Search ChEMBL for molecules by name, structure, or similarity and retrieve canonical identifiers.
2
Fetch bioactivity data and related assay/document details for compounds to support analysis or decision-making.
3
Integrate ChEMBL lookups into desktop assistants (e.g., Claude for Desktop) or other MCP-compatible clients.

Description

This project implements a Model Context Protocol (MCP) server exposing ChEMBL database functionality. It provides tools to search for molecules by name or structure, retrieve detailed molecule/target/assay information, and obtain bioactivity data and related documents. The server is compatible with MCP clients (including Claude for Desktop) and can be run locally or installed as a Python package. It is intended to streamline integration of ChEMBL data into agent workflows and desktop assistants.

Quick Actions

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Security

Scanned 2 month(s) ago

Risk Level

MINIMAL

Read-only data retrieval, no side effects

Trust Score

D44/100

4/17 checks passed

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Quick Stats

Service TypeMCP

Pricing ModelFree

Capabilities0 Tools / 0 Prompts / 0 Resources

OwnerBioContext

CategoryHealthcare & Bioinformatics

DependenciesStandalone