UniProt MCP Server

Example Use Cases

• 1

  Perform detailed protein searches and retrieve comprehensive protein information from UniProt.

• 2

  Conduct comparative and evolutionary protein analyses including homolog and ortholog identification.

• 3

  Integrate structural, functional, and pathway data for proteins in bioinformatics workflows.

Description

This unofficial MCP server enables AI assistants and MCP clients to perform comprehensive protein research, comparative genomics, structural biology, and systems biology analyses by interfacing directly with the UniProt REST API. It offers a wide range of tools including protein search, detailed protein info retrieval, evolutionary analysis, structural data access, pathway integration, batch processing, literature references, and data export utilities. Developed by Augmented Nature, it facilitates sophisticated bioinformatics workflows and seamless integration via URI templates and Docker support.