AlphaFold MCP Server

Example Use Cases

• 1

  Retrieve and analyze AlphaFold protein structure predictions by UniProt ID.

• 2

  Perform batch processing and comparative analysis of multiple protein structures.

• 3

  Prepare protein structure data for visualization in tools like PyMOL and ChimeraX.

Description

The AlphaFold MCP Server offers seamless integration with the AlphaFold Protein Structure Database, enabling users to retrieve protein structure predictions by UniProt ID, perform confidence and quality analyses, conduct batch processing, and prepare data for visualization. It supports multiple output formats and includes tools for comparative and organism-wide studies, making it ideal for researchers and bioinformaticians working with predicted protein structures. The server acts as a convenient interface without storing data locally, fetching all information directly from the official AlphaFold API.